charlesrabolli.com

Publications

18 peer-reviewed papers spanning RNA biology, cardiovascular science, bioengineering, and now computational pathology. For the live list, see PubMed or Google Scholar.

In progress

  1. Unified multi-foundation-model slide representation for pan-cancer recognition and text-guided tumor localization (ASTRA)

    Wang T, Su Z, Akbar AR, Sajjad U, Gokhale L, Rabolli CP, Chen W, Parwani A, Niazi MKK

    Nature Communications · Under review

  2. Dino-NestedUNet: unlocking foundation vision encoders for pathology tumor bulk segmentation via dense decoding

    Wang T, Su Z, Akbar AR, Sajjad U, Afzaal U, Gokhale L, Rabolli CP, Chen W, Parwani A, Niazi MKK

    In preparation

National Academies report

  1. Vision for a Unified Epitranscriptomics Consortium (EpiC)

    Chiu NHL, Fu D, Maligireddy SS, Rabolli CP, Tsotakos N, Vilseck JZ

    In: Charting a Future for Sequencing RNA and Its Modifications: A New Era for Biology and Medicine. National Academies of Sciences, Engineering, and Medicine (2024).

    Commissioned paper selected from the NASEM Ideation Challenge · equal contribution

    doi

Peer-reviewed

2025

  1. AIMP3 maintains cardiac homeostasis by regulating the editing activity of methionyl-tRNA synthetase

    Das AS, Rabolli CP, Martens CR, Jiang HK, Zhang Y, Zimmer AA, Lin K, Baskin KK, Alfonzo JD, Accornero F

    Nature Cardiovascular Research 4(7):876–890

    doipubmed

  2. The cardiac METTL3/m6A pathway regulates the systemic response to Western diet

    Rabolli CP, Longenecker JZ, Naarmann-de Vries IS, Serrano J, Petrosino JM, Kyriazis GA, Dieterich C, Accornero F

    JCI Insight 10(11):e188414 first author

    doipubmed

  3. The m6A-binding protein YTHDF3 modulates the cardiac response to stress

    Rabolli CP, Das AS, Golubeva VA, van Berlo JH, Accornero F

    RNA 31(7):923–932 first author

    Subject of an invited commentary in RNA (Costantino & Paneni, 2025)

    doipubmed

2024

  1. CITED4 gene therapy protects against maladaptive cardiac remodeling after ischemia/reperfusion injury in mice

    Lerchenmüller C, Hastings MH, Rabolli CP, Betge F, Roshan M, Liu LX, Liu X, Heß C, Roh JD, Platt C, Bezzerides V, Busch M, Katus HA, Frey N, Most P, Rosenzweig A

    Molecular Therapy 32(10):3683–3694

    doipubmed

  2. YTHDF1 is pivotal for maintenance of cardiac homeostasis

    Golubeva VA, Das AS, Rabolli CP, et al.

    Journal of Molecular and Cellular Cardiology 193:25–35

    doipubmed

  3. Nanopore detection of METTL3-dependent m6A-modified mRNA reveals a new mechanism regulating cardiomyocyte mitochondrial metabolism

    Rabolli CP, Naarmann-de Vries IS, Makarewich CA, et al.

    Circulation 149(16):1319–1322 first author

    doipubmed

  4. YTHDF2 governs muscle size through a targeted modulation of proteostasis

    Gilbert CJ, Rabolli CP, Golubeva VA, et al.

    Nature Communications 15(1):2176

    doipubmed

  5. Cardiac cryptographers: cracking the code of the epitranscriptome

    Rabolli CP, Accornero F

    European Heart Journal 45(23):2034–2036 first author

    doipubmed

  6. In vitro inflammatory multi-cellular model of osteoarthritis

    Marrero-Berrios I, Salter SE, Hirday R, Rabolli CP, et al.

    Osteoarthritis and Cartilage Open 6(1):100432

    doipubmed

2023

  1. Loss of YTHDF2 alters the expression of m6A-modified Myzap and causes adverse cardiac remodeling

    Golubeva VA, Dorn LE, Gilbert CJ, Rabolli CP, et al.

    JACC: Basic to Translational Science 8(9):1180–1194

    doipubmed

2022

  1. m6A RNA methylation: a dynamic regulator of cardiac muscle and extracellular matrix

    Rabolli CP, Accornero F

    Current Opinion in Physiology 28:100561 first author

    doipubmed

  2. Mineralocorticoid receptor antagonists and glucocorticoids differentially affect skeletal muscle inflammation and pathology in muscular dystrophy

    Howard ZM, Gomatam CK, Rabolli CP, et al.

    JCI Insight 7(19):e159875

    doipubmed

  3. Restoration of cardiomyogenesis in aged mouse hearts by voluntary exercise

    Lerchenmüller C, Vujic A, Mittag S, Wang A, Rabolli CP, et al.

    Circulation 146(5):412–426

    doipubmed

2020

  1. Multi-layer stackable tissue culture platform for 3D co-culture

    Marrero-Berrios I, Shrirao A, Rabolli CP, Hirday R, Schloss RS, Yarmush ML

    Technology 8(01n02):37–49

    doi

  2. CITED4 protects against adverse remodeling in response to physiological and pathological stress

    Lerchenmüller C, Rabolli CP, Yeri A, et al.

    Circulation Research 127(5):631–646

    doipubmed

2019

  1. Alginate encapsulation for bupivacaine delivery and mesenchymal stromal cell immunomodulatory cotherapy

    Davis MS, Marrero-Berrios I, Perez I, Rabolli CP, et al.

    Journal of Inflammation Research 12:87–97

    doipubmed

2018

  1. Exercise induces new cardiomyocyte generation in the adult mammalian heart

    Vujic A, Lerchenmüller C, Wu TD, Guillermier C, Rabolli CP, et al.

    Nature Communications 9(1):1659

    doipubmed

2016

  1. Elastin-like polypeptides: a strategic fusion partner for biologics

    Yeboah A, Cohen RI, Rabolli C, Yarmush ML, Berthiaume F

    Biotechnology and Bioengineering 113(8):1617–1627

    doipubmed